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NAME
ProteinViewer (ver. 0.6) - View a folded tetrahedron sequence which approximates the given protein structure. ProteinViewer is a OpenGL program written in C and uses the GLUT library.
(About ver. 0.6 : support CH, CX, and CK, i.e., white and black spheres,
                           support single-atom chains, which you could use to draw hetatoms,
                           AND minor bug fix.)


DOWNLOADS (Free for academic use)
Goto download page

SYNOPSIS
ProteinViewer    filename

INPUT
An "udcode" file generated by "ProteinEncoder", "NtileCodePredictor" or "TetraSeqGen" programs.
(Example, Example of 5tile-code)

OUTPUT
Open a view window. (ExampleExample of 5tile-code)

CONTROLS
There are some keys (toggle switches) you can use:

DESCRIPTION
ProteinViewer reads an "udcode" file and shows the folded tetrahedron sequence which approximates the given protein structure.
In general, a CA atom is drawn as a small white sphere.  But,
it is drawn as a large red sphere if you mark it with CR (instead of CA) in the "udcode" file, 
it is drawn as a large yellow sphere if you mark it with CY,
it is drawn as a large orange sphere if you mark it with CO,
it is drawn as a large blue sphere if you mark it with CB,
it is drawn as a large green sphere if you mark it with CG,
it is drawn as a small red sphere if you mark it with CU,
it is drawn as a small orange sphere if you mark it with CV,
it is drawn as a small blue sphere if you mark it with CW.
it is drawn as a large white sphere if you mark it with CH,
it is drawn as a large black sphere if you mark it with CK,
and it is drawn as a small black sphere if you mark it with CX.
(Example: udcode file and its image)

Moreover, you could draw a HETATOM as single-atom chain (by manually editing the <PDB data> section of ".udcode" files).