ProteinViewer reads an
"udcode" file and shows the folded tetrahedron
sequence which approximates the given protein structure.
- N-terminals are drawn as a small red sphere.
- C-terminals are drawn as a small blue sphere.
- Protein backbones ar
it is drawn
as a small red sphere if you mark it with CU,
it is drawn
as a small orange sphere if you mark it with CV,
and it is drawn as a small
blue sphere if you mark it with CW. it is drawn
as a small red sphere if you mark it with CU,
it is drawn
as a small orange sphere if you mark it with CV,
and it is drawn as a small
blue sphere if you mark it with CW. e drawn as white broken cylinders.
- Tetrahedrons which correspond to CA atoms are coloured red.
In general, a CA atom is drawn as a small white sphere.
But,
it is
drawn as a large red sphere if you
mark it with CR (instead of CA) in the "udcode" file,
it is drawn
as a large
yellow sphere if you mark it with CY,
it is drawn
as a large orange sphere if you mark it with CO,
it is drawn
as a large blue sphere if you mark it with CB,
it is drawn
as a large green sphere if you mark it with CG,
it is drawn
as a small red sphere if you mark it with CU,
it is drawn
as a small orange sphere if you mark it with CV,
it is drawn as a small
blue sphere if you mark it with CW.
it is drawn
as a large white sphere if you mark it with CH,
it is drawn
as a large black sphere if you mark it with CK,
and it is drawn as a small
black sphere if you mark it with CX.
(Example:
udcode
file and
its
image)
Moreover, you could draw a HETATOM as single-atom chain (by manually editing
the <PDB data> section of ".udcode" files).