[From
2006-10-7 to 2007-10-26]
2007-10-26: Add an arXiv link to "Discrete differential
geometry of tetrahedrons and encoding of local
protein structure."
See PAPERS /
Discrete differential geometry of N-simplices.
2007-10-26:
Add a pdf of "Local
feature detection in protein and RNA
aptamer structures based on differential geometry of tetrahedron
sequences."
See PAPERS /
Protein structure and RNA aptamer structure.
2007-10-18: Add a pdf and a ppt of "Introduction to Hetero numbers
(1)".
See PAPERS / Misc.
2007-10-17: Add
"Introduction to Hetero numbers (1)". See Research / (4) Hetero numbers.
2007-10-14: Replace
figures of EXAMPLES(Hetero numbers) / Dodecahedron (1)&(2).
2007-10-14: New release, HeteroNumberViewer ver. 0.3. (fix a
bug in the
IN/BD/OUT classification).
2007-10-06: New
release, HeteroNumberViewer ver. 0.2. (performance
enhancement).
2007-10-03: New
release, HeteroNumberViewer ver. 0.1a. (fix a bug of float
comparison).
2007-10-03: Add new
examples (Hetero numbers / Dodecahedron (2)).
2007-10-02: Add new
examples (Hetero numbers / Distribution of closed trajectories
& Dodecahedron (1)).
2007-10-01: New release, HeteroNumberViewer ver. 0.1.
2007-08-27: Modify the Research section (1) and (2): adding figures of
turns and RNA_aptamer.
2007-08-23: Add new examples (Encoding / RNA_aptamer)
2007-08-22:
New release, ProteinEncoder ver.
0.5. (support RNA/DNA encoding)
2007-08-07: Add pdf and ppt of "DDG
of tetrahedron tiles and local protein structure" in
the section "Miscellaneous" of PAPERS.
2007-07-29: Add "DDG
of tetrahedron tiles and local protein structure" in the research
section (1).
2007-07-27:
New release, ProteinEncoder ver.
0.4b. (Change colors: yellow for 'R' and orange for 'B' and
'Q')
2007-07-26: Rewrite
"algorithm of the 5-tile encoding" in the research section (1).
2007-07-24: Modify
the Research section (1) and (2) : adding figures about 5-tile encoding
and "origami" folding.
2007-04-18: Add new
examples (Protein design / CASP7 targets and superfolds),
which
show results of amino acid prediction by
NtileCodePredictor.
2007-04-16:
New release, ProteinEncoder ver.
0.4a. (residues of 5-tile 'R' are drawn as large
orange spheres)
2007-04-15:
New release, NtileCodePredictor ver.
0.2. (support "protein design")
2007-04-15:
New release, ProteinEncoder ver.
0.4. (residues of 5-tile 'G' are drawn as large
green spheres)
2007-04-15:
New release, ProteinViewer ver.
0.3. (support more colors CO, CB, CG, CU, CV)
2007-03-16: Add new
examples (Encoding), which show the frequency distribution of the TOP
30 5-tile
code fragments in
ASTRAL SCOP 1.71 (95%).
2007-03-12: Add
introduction to the predictions of the 5-tile code sequence of
amino acid sequences.
See HOME >
Research > (1) Protein structure
2007-03-10: Add
introduction to the 5-tile encoding of local protein structures.
See HOME >
Research > (1) Protein structure.
2007-03-08: Add new
examples (prediction / CASP7 targets and superfolds),
which
show results of 5-tile code prediction by
NtileCodePredictor.
2007-03-08: New release, NtileCodePredictor ver.
0.1a. (fix a program bug of serial number overflow)
2007-03-08:
New release, ProteinEncoder ver.
0.3a. (fix
a program bug of serial number overflow)
2007-03-05: New
release, NtileCodePredictor ver.
0.1.
2007-02-16: Add new examples
(Structural motifs), which show the DSSP code / 5-tile code /
PB sequence
of helices, alpha kinks, beta-bulges, and beta-turns.
2007-02-15: Add new examples (Superfolds2), which show the frequency
distribution of the DSSP code /
5-tile code / PB
fragments
2007-02-15: New release, ProteinEncoder ver 0.3. (fix the
initial tile type for N-tile encoding)
2007-02-15: Replace the Makefile of ProteinViewer ver 0.2 for
Unix, i.e., ProteinViewer02X11.tar.gz
(Bug fix)
2007-02-13: Add new examples (I-sites motifs), which show the DSSP code
/ 5-tile code /
PB sequence
of the I-sites
motifs
2006-11-20: New
release, ProteinEncoder ver 0.2. (support the N-tile encoding)
2006-11-20: New release, ProteinViewer
ver 0.2. (support the N-tile encoding)
2006-10-7: Opening of the homepage.