[From
2009-01-01 to 2009-12-31]
2009-11-25:
Add Examples
in [SUMMARY] of RESULT (c) Average values of five
metrics
See EXAMPLES
(Prediction/Alignment/Others) > Multi.-struct. sequences
> Statistical Analysis.
2009-11-22:
Add "SUMMARY"
in "RESULT (c) Average values of five
metrics"
See
EXAMPLES
(Prediction/Alignment/Others) > Multi.-struct. sequences
> Statistical Analysis.
2009-10-18:
Add "RESULT (a) Examples"
See EXAMPLES
(Prediction/Alignment/Others) > Multi.-struct. sequences
> Statistical Analysis.
2009-09-23:
Add figures in "Statistical
Analysis RESULT"
See
EXAMPLES
(Prediction/Alignment/Others) > Multi.-struct. sequences
> Statistical Analysis.
2009-09-23:
Fix errors due to bug of a script file in "Statistical
Analysis RESULT"
See
EXAMPLES
(Prediction/Alignment/Others) > Multi.-struct. sequences
> Statistical Analysis.
2009-09-16:
Revise "Statistical Analysis
METHOD and RESULT"
See
EXAMPLES
(Prediction/Alignment/Others) > Multi.-struct. sequences
> Statistical Analysis.
2009-08-07:
Add "Statistical Analysis
RESULT: (a) Average values"
See EXAMPLES
(Prediction/Alignment/Others) > Multi.-struct. sequences
> Statistical Analysis.
2009-08-02:
Add "(0)
Golden
standard of 60 representative pairs, Statistical Analysis"
See EXAMPLES
(Prediction/Alignment/Others) > Multi.-struct. sequences.
2009-06-19:
Add "(0) Golden
standard of 60 representative pairs, from cluster 51 to
cluster 60"
See EXAMPLES
(Prediction/Alignment/Others) > Multi.-struct. sequences.
2009-06-17:
Add "(0) Golden
standard of 60 representative pairs, from cluster 46 to
cluster 50"
See EXAMPLES
(Prediction/Alignment/Others) > Multi.-struct. sequences.
2009-06-14:
Add "(0) Golden
standard of 60 representative pairs, from cluster 31 to cluster 45"
See EXAMPLES
(Prediction/Alignment/Others) > Multi.-struct. sequences.
2009-06-08:
Add "(0) Golden
standard of 60 representative pairs, from cluster 21 to cluster 30"
See EXAMPLES
(Prediction/Alignment/Others) > Multi.-struct. sequences.
2009-05-31:
Add "(0) Golden
standard of 60 representative pairs, from cluster 11 to cluster 20"
See EXAMPLES
(Prediction/Alignment/Others) > Multi.-struct. sequences.
2009-05-24:
Add "(0) Golden
standard of 60 representative pairs, from cluster 1 to cluster 10."
See EXAMPLES
(Prediction/Alignment/Others) > Multi.-struct. sequences.
2009-04-29:
Add "Distribution of
minor phi and psi dihedral angles" in (3.1) Variable
regions of Crystal structures and NMR models.
See EXAMPLES
(Prediction/Alignment/Others) > Variable regions of HIV-1 PR.
2009-04-22:
Add "Distribution of
minor PB-block codes"
in (3.1) Variable regions of Crystal structures and NMR models.
See EXAMPLES
(Prediction/Alignment/Others) > Variable regions of HIV-1 PR.
2009-04-19:
Add (d) the
frequency
distribution of (PBE-ALIGN GA score, Z score) in (3)
Selectivity.
See EXAMPLES
(Encoding/Decoding) > Statistics.
2009-04-19:
Add the frequency
distribution of (#{PB block conflicts}, Z score) in (2)
Sensitivity.
See EXAMPLES
(Encoding/Decoding) > Statistics.
2009-03-25: New release, ProteinEncoder ver. 0.8. (support different
alternate location indicators for different chains)
See PROGRAMS > ProteinEncoder.
2009-03-25: New release, NtileCodePredictor ver. 0.4. (support
different alternate location indicators for different chains)
See PROGRAMS >
NtileCodePredicitor.
2009-03-18:
Add (3.3)
Apo-/Holo-forms and (4) Examples
of the "Identification of Variable Regions of HIV-1 Protease" section.
See EXAMPLES
(Prediction/Alignment/Others) > Variable regions of HIV-1 PR.
2009-03-17:
Add (3.1) Crystals/NMRs
and (3.2) Space groups
of the "Identification of Variable Regions of HIV-1 Protease" section.
See EXAMPLES
(Prediction/Alignment/Others) > Variable regions of HIV-1 PR.
2009-03-16:
Add (2) Code assignment
of the "Identification of Variable Regions of HIV-1 Protease" section.
See EXAMPLES
(Prediction/Alignment/Others) > Variable regions of HIV-1 PR.
2009-03-15:
Add (0) Dataset and
(1) Fragment
of the "Identification of Variable Regions of HIV-1 Protease" section.
See EXAMPLES
(Prediction/Alignment/Others) > Variable regions of HIV-1 PR.
2009-02-28:
Add "frag_code5_full_HIV1PR_ID.tbl" table (fragments of HIV-1 protease
variants with PDB ID)
2009-02-28:
Add "frag_code5_full173_ID.tbl" table (fragments with SCOP ID)
See PROGRAMS >
NtileCodePredictor > DOWNLOADS.
2009-02-21:
Add D2 code preference table (ASTRAL
SCOP 1.73)
See EXAMPLES
(Encoding/Decoding) > Statistics.
2009-02-06:
Add a manuscript of "Systematic analysis of local flexibility of
multiple-structure proteins" (rev.1).
See PAPERS >
Protein structure and RNA aptamer structure.
2009-01-11:
Add explanation of the width of the slide step of the "compare window"
of ComSubstruct.
See PROGRAMS > ComSubstruct
> DESCRIPTION > -w window_width
2009-01-05:
Add the "See more ..." section: (3) Selectivity.
See EXAMPLES
(Encoding/Decoding) > Statistics.